iSPOT: Web tool to infer the interaction specificity of families of protein modules

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

Relibase: A program for searching protein-ligand databases

ConInspector: Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids.

MHCPred: Server for quantitative prediction of peptide–MHC binding